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  1. or Q & A  in advanced, prior to your session. Create a Meeting Request ...
  2. To read more about Singularity : https://sylabs.io/guides/3.0/user-guide/

    To read more about Docker : https://www.docker.com/why-docker

    To get started with Anaconda : https://it.stonybrook.edu/help/kb/installed-software-on-seawulf

  3. SeaWulf is a computational cluster using top of the line components from Penguin, DDN, Intel, Nvidia, Mellanox and numerous other technology partners.  Its name is a portmanteau of "Seawolf" and "Beowulf," the name of one of the first high performance computing clusters.

  4. LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel Simulator. It's a classical molecular dynamics (MD) code. As the name implies, it's designed to run well on parallel machines, but it also runs fine on single-processor desktop machines. http://lammps.sandia.gov/index.html

  5. This article will discuss how to successfully parallelize jobs using OpenMP, Message Passing Interface (MPI), and a combination of the two.

  6. If you have a Stony Brook email address, this also gives you access to a Google Drive account with virtually unlimited storage (the only restriction is that no single file can exceed 5 TB).  This article will explain how to backup your data on SeaWulf to Google Drive using rclone

  7. requested (number of nodes, job time), and how long your job will wait ... Contact IACS Support System Request Access or Report an Issue Not Rated ...
  8. additional support, you can contact our department by opening a service request ...
  9.  Using the Stony Brook VPN on a Windows Machine Request access to use ...
  10. Slurm is an open source workload manager and job scheduler that is now used for all SeaWulf queues in place of PBS Torque/Maui.  This FAQ will explain how to use Slurm to submit jobs.  This FAQ utilizes information from several web resources.  Please see here and here for additional documentation.  

  11. Stony Brook's Division of Information Technology (DoIT) moved all Blackboard course content (and Communities/Orgs that were requested) from Fall 2021 - Spring 2023  into Brightspace as repositories.  This page explains how you can reuse the content that was migrated.

  12. this: Save the file as a.csv file Create a help ticket requesting we ...
  13. Instructors can add Stony Brook users with NetIDs to their Brightspace Courses. Be sure to add users using a unique identifier like their NetID or Stony Brook ID.

  14. Amber is a collection of software used for simulating molecules, managed by a dedicated developer community. It consists of two main parts: AmberTools23, which contains standalone packages for molecular simulations, and Amber22, an expansion that includes enhanced performance through the 'pmemd' program. This improvement makes molecular dynamics simulations significantly faster, especially when using multiple CPUs and GPUs.

  15. Information Contact IACS Support System Request Access or Report an Issue ...

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