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  1. FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging. FreeSurfer is the structural MRI analysis software of choice for the Human Connectome Project. See https://surfer.nmr.mgh.harvard.edu/fswiki for more info.

  2. your needs: module load torque qsub-I-X-l nodes=1:ppn=28-q short After your interactive session ...
  3. is that network traffic is directed through different hosts or nodes before reaching the internet. Although ... of these networks are completely reliant upon the unknown network nodes your traffic is travelling through, which ...
  4. as shared. Local modules are local to the login node. Shared modules are used throughout the entire machine. ...
  5. As most other HPC systems, computational tasks are managed through a batch proecssing system on both LIred and SeaWulf. Using this model a batch script is created using any text editor and submitted to a job scheduer which distributes the necessary resources. Both LIred and SeaWulf utilize Torque for these tasks.

  6. symposium. The fellowship provides up to 50,000 node-hours on the Blue Waters system to support the fellow’s ... and engineering. Blue Waters features: Nearly 27,000 very high-performance computational nodes including more than ...
  7. Darshan is a scalable HPC I/O characterization tool designed to capture an accurate picture of application I/O behavior, including properties such as patterns of access within files, with minimum overhead. 

    Darshan was originally developed on the IBM Blue Gene series of computers deployed at the Argonne Leadership Computing Facility, but it is portable across a wide variety of platforms include the Cray XE6, Cray XC30, and Linux clusters.

  8. can access all 8 gpus on the node, you can run the following program: ...
  9. RSA keys allow users to SSH into a system without having to enter a password. Instead, a locally stored key file is authenticated using the RSA cryptosystem (read more here). This practically allows users to write automated scripts utilizing SSH login without having to compromise password security.

  10. As with most High Performance Computing systems, Seawulf and Li-red employ Environment Modules for managing development environments and providing software to users. Typically users initialize their environment when they log in by setting environment information for every application they will reference during the session. The Environment Modules package is a tool that simplifies shell initialization and lets users easily modify their environment during the session with modulefiles.

  11. LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel Simulator. It's a classical molecular dynamics (MD) code. As the name implies, it's designed to run well on parallel machines, but it also runs fine on single-processor desktop machines. http://lammps.sandia.gov/index.html

  12.     DPLN Change (Move existing number to different Switch Node)   $ 77.25     *Disconnection applies only ...

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