Using FSL

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.  It is developed by the Analysis Group at FMRIB of the University of Oxford.

Audience: Faculty, Guests, Researchers and Staff

This KB Article References:
This Information is Intended for: Faculty, Guests, Researchers, Staff
Last Updated: October 13, 2017

Current Version

FSL 5.0.10 is available on SeaWulf as a module.  This can be accessed by:

module load fsl/5.0.10

 

FDT Submission Scripts

For FDT submission scripts you must set the FSLMACHINELIS environment variable with the following command:

export FSLMACHINELIS=awk 'NR%2{{printf "%s ",$0;next;}}1' $PBS_NODEFILE

 

See https://fsl.fmrib.ox.ac.uk/fsl/fslwiki for more info.

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