Using FSL

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It is developed by the Analysis Group at FMRIB of the University of Oxford.

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This KB Article References: High Performance Computing
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Last Updated: March 04, 2024
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Current Version

FSL 5.0.10 is available on SeaWulf as a module. This can be accessed by:

module load fsl/5.0.10

FDT Submission Scripts

For FDT submission scripts you must set the FSLMACHINELIS environment variable with the following command:

export FSLMACHINELIS=awk 'NR%2{{printf "%s ",$0;next;}}1' $SLURM_NODELIST

See https://fsl.fmrib.ox.ac.uk/fsl/fslwiki for more info.

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