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  1. It may be necessary at times to transfer files from a local computer to the HPC cluster, or vice versa.  This article will provide instructions on how to do so.

  2. ​Globus is a non-profit service for secure, reliable research data management.

  3. Alphafold2 is a GPU-based Machine Learning method for protein structure prediction.  This article will explain how to access the software on SeaWulf and provide an example of its use.

  4. Instead of using a dedicated file transfer program to access/transfor files to/from SeaWulf, you could instead mount them on your machine over the network. This lets you move them, open them, search or copy as if they were on your machine locally. SSHFS is a tool that lets you mount directories from SeaWulf (or other remote servers) on your machine over SSH.

  5. in other Excel documents.  This article describes how to transfer global ... a new computer but find that your Excel files do not have the macros you've ... Macro Workbook: Windows On your old  computer, open File Explorer on your ...
  6. To read more about Singularity : https://sylabs.io/guides/3.0/user-guide/

    To read more about Docker : https://www.docker.com/why-docker

    To get started with Anaconda : https://it.stonybrook.edu/help/kb/installed-software-on-seawulf

  7. MySBfiles is a network storage option for all students, faculty, and staff. Up to 2 GB of data can be stored in your personal MySBfiles which is backed up regularly on an automated basis by University servers. You can access your MySBfiles from on or off campus using a Web browser. 

    Note: Users on the UHMC domain will use their Home Directory ("U Drive") instead of MySBfiles. For information please call the UHMC Help Desk at 4-HELP.

  8. at http://www.stonybrook.edu/mycloud using your NetID and NetID Password In the top-right corner of mail, ... succesfully pre-configured your Google Apps for Education account for use ... Then authenticate with your NetID and NetID Password   Select which apps to use ...
  9. Department shared folders are a secure and convenient way for staff members within a department to share and collaborate on documents and other files.  You can map department shared folders and control who can access them from the Active Directory.

  10. This article will discuss how to successfully parallelize jobs using OpenMP, Message Passing Interface (MPI), and a combination of the two.

  11. LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel Simulator. It's a classical molecular dynamics (MD) code. As the name implies, it's designed to run well on parallel machines, but it also runs fine on single-processor desktop machines. http://lammps.sandia.gov/index.html

  12. Stony Brook University offers researchers several different options depending on needs.

  13. This article will explain how to use the Common Internet File System (CIFS) network protocol to access data in your SeaWulf project space via the campus network connection without the need for SSH/SFTP.  

  14. to you.  Jupyter notebook will only have access to your home directory. If you are interested in accessing files outside of the home directory ... on the applicable files stored on SeaWulf. There are two ways to edit the directory ...
  15. Teaching Assistants The OneDrive app makes it easy to transfer and view files ... will be created. This folder will contain all of your current OneDrive files and will sync files you put into it to your OneDrive. You can access this folder ...
  16. If you have a Stony Brook email address, this also gives you access to a Google Drive account with virtually unlimited storage (the only restriction is that no single file can exceed 5 TB).  This article will explain how to backup your data on SeaWulf to Google Drive using rclone

  17. On the SeaWulf cluster, data storage is a finite resource. Anticipating that user demand for data often changes, we allot storage space as needed. Requests for storage beyond the default amount are submitted through the ticketing system.

  18. current throughout your time at Stony Brook. In this article you will learn: ... your Home or Other email address.  You cannot edit or change your Campus address here.  To change your Home or Other email address, highlight all ...
  19. https://it.stonybrook.edu/help/kb/installing-and-signing-into-the-zoom-application-client *Some features only work in the Zoom Client.   Troubleshooting ... and are prompted to link or transfer from your account, follow the prompts to do so ... to download and install the Zoom Application to your device to be able to use ...
  20. into your project folder: rsync-avz file.txt /gpfs/projects/SmithGroup Use ... will  not  use the correct permissions when copying files into your ... in the given <DIRECTORY>. mv command The mv command is the fastest way to get files into your ...

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